RPANDA: Phylogenetic ANalyses of DiversificAtion

Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) <doi:10.1371/journal.pbio.1000493>, Morlon et al. (2011) <doi:10.1073/pnas.1102543108>, Condamine et al. (2013) <doi:10.1111/ele.12062>, Morlon et al. (2014) <doi:10.1111/ele.12251>, Manceau et al. (2015) <doi:10.1111/ele.12415>, Lewitus & Morlon (2016) <doi:10.1093/sysbio/syv116>, Drury et al. (2016) <doi:10.1093/sysbio/syw020>, Manceau et al. (2016) <doi:10.1093/sysbio/syw115>, Morlon et al. (2016) <doi:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <doi:10.1073/pnas.1606868114>, Drury et al. (2017) <doi:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <doi:10.1093/sysbio/syx095>, Drury et al. (2018) <doi:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, Maliet et al. (2019) <doi:10.1038/s41559-019-0908-0>, Billaud et al. (2019) <doi:10.1093/sysbio/syz057>, Lewitus et al. (2019) <doi:10.1093/sysbio/syz061>, Aristide & Morlon (2019) <doi:10.1111/ele.13385>, and Maliet et al. (2020) <doi:10.1111/ele.13592>.

Version: 1.9
Depends: R (≥ 2.14.2), picante, methods
Imports: ape, bipartite, cluster, coda, corpcor, deSolve, fields, fpc, geiger, glassoFast, graphics, grDevices, igraph, Matrix, mvMORPH (≥ 1.1.0), mvtnorm, parallel, phytools, pracma, pspline, pvclust, raster, Rmpfr, stats, TESS, utils
Suggests: testthat
Published: 2020-09-15
Author: Hélène Morlon [aut, cre, cph], Eric Lewitus [aut, cph], Fabien Condamine [aut, cph], Marc Manceau [aut, cph], Julien Clavel [aut, cph], Jonathan Drury [aut, cph], Olivier Billaud [aut, cph], Odile Maliet [aut, cph], Leandro Aristide [aut, cph]
Maintainer: Hélène Morlon <helene.morlon at bio.ens.psl.eu>
License: GPL-2
URL: https://github.com/hmorlon/PANDA
NeedsCompilation: yes
Citation: RPANDA citation info
Materials: README
CRAN checks: RPANDA results

Downloads:

Reference manual: RPANDA.pdf
Package source: RPANDA_1.9.tar.gz
Windows binaries: r-devel: RPANDA_1.9.zip, r-devel-UCRT: RPANDA_1.9.zip, r-release: RPANDA_1.9.zip, r-oldrel: RPANDA_1.9.zip
macOS binaries: r-release (arm64): RPANDA_1.9.tgz, r-release (x86_64): RPANDA_1.9.tgz, r-oldrel: RPANDA_1.9.tgz
Old sources: RPANDA archive

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