GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article <doi:10.1038/s41598-020-73326-3>.

Version: 1.2.1
Depends: R (≥ 2.10), ggplot2, GO.db, gontr
Imports: igraph, network, ggnetwork, dplyr, biomaRt, annotate, graphics
Suggests: knitr, rmarkdown
Published: 2021-06-07
Author: Kalifa Manjang, Frank Emmert-Streib, Shailesh Tripathi, Olli Yli-Harja, Matthias Dehmer
Maintainer: Kalifa Manjang <kalifamanjang1 at gmail.com>
License: GPL-2
NeedsCompilation: no
CRAN checks: GOxploreR results

Downloads:

Reference manual: GOxploreR.pdf
Vignettes: GOxploreR
Package source: GOxploreR_1.2.1.tar.gz
Windows binaries: r-devel: GOxploreR_1.2.1.zip, r-release: GOxploreR_1.2.1.zip, r-oldrel: GOxploreR_1.2.1.zip
macOS binaries: r-release (arm64): not available, r-release (x86_64): not available, r-oldrel: GOxploreR_1.2.1.tgz
Old sources: GOxploreR archive

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