CRAN Package Check Results for Package tidytree

Last updated on 2021-09-23 05:51:47 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.5 7.81 62.19 70.00 OK
r-devel-linux-x86_64-debian-gcc 0.3.5 5.39 46.46 51.85 OK
r-devel-linux-x86_64-fedora-clang 0.3.5 93.79 OK
r-devel-linux-x86_64-fedora-gcc 0.3.5 78.88 OK
r-devel-windows-x86_64 0.3.5 9.00 63.00 72.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.3.5 ERROR
r-patched-linux-x86_64 0.3.5 7.92 57.31 65.23 OK
r-patched-solaris-x86 0.3.5 111.30 OK
r-release-linux-x86_64 0.3.5 6.85 57.82 64.67 OK
r-release-macos-arm64 0.3.5 OK
r-release-macos-x86_64 0.3.5 ERROR
r-release-windows-ix86+x86_64 0.3.5 18.00 59.00 77.00 OK
r-oldrel-macos-x86_64 0.3.5 ERROR
r-oldrel-windows-ix86+x86_64 0.3.5 13.00 60.00 73.00 ERROR

Check Details

Version: 0.3.5
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.3.5
Check: PDF version of manual without hyperrefs or index
Result: ERROR
    Re-running with no redirection of stdout/stderr.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.3.5
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'ggtree', 'treeio'
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.3.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [1s/1s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("tidytree")
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-dplyr-methods.R:6:1): (code run outside of `test_that()`) ───────
     Error: there is no package called 'treeio'
     Backtrace:
     █
     1. ├─read.tree(text = nwk) %>% treeio::as.treedata() test-dplyr-methods.R:6:0
     2. └─base::loadNamespace(x)
     3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     4. └─base:::withOneRestart(expr, restarts[[1L]])
     5. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-x86_64

Version: 0.3.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [1s/1s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     Backtrace:
     █
     1. ├─read.tree(text = nwk) %>% treeio::as.treedata() test-dplyr-methods.R:6:0
     2. └─treeio::as.treedata
     3. └─base::getExportedValue(pkg, name)
     4. └─base::asNamespace(ns)
     5. └─base::getNamespace(ns)
     6. └─base::loadNamespace(name)
     7. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     8. └─base:::withOneRestart(expr, restarts[[1L]])
     9. └─base:::doWithOneRestart(return(expr), restart)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 47 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 0.3.5
Check: tests
Result: ERROR
     Running 'testthat.R' [3s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(tidytree)
    
     Attaching package: 'tidytree'
    
     The following object is masked from 'package:stats':
    
     filter
    
     >
     > test_check("tidytree")
     == Failed tests ================================================================
     -- Error (test-dplyr-methods.R:72:5): mutate fields for treedata and return treedata --
     Error: object 'get_aes_var' is not exported by 'namespace:rvcheck'
     Backtrace:
     x
     1. \-ggtree::ggtree test-dplyr-methods.R:72:4
     2. \-base::getExportedValue(pkg, name)
     3. \-base::asNamespace(ns)
     4. \-base::getNamespace(ns)
     5. \-base::loadNamespace(name)
     6. \-base::namespaceImportFrom(...)
     7. \-base::importIntoEnv(impenv, impnames, ns, impvars)
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 66 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64