phyclust: Phylogenetic Clustering (Phyloclustering)

Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach to identify population structure from molecular data without assuming linkage equilibrium. It provides a convenient implementation of phyloclustering for DNA and SNP data, capable of clustering individuals into subpopulations and identifying molecular sequences representative of those subpopulations. It is designed in C for performance, interfaced with R for visualization, and incorporates other popular open source software, ms, seq-gen and Hap-Clustering for simulating data and additional analyses. See the phyclust website for more information, documentations and examples.

Version: 0.1-10
Depends: R (≥ 2.6.0), ape
Published: 2011-11-06
Author: Wei-Chen Chen
Maintainer: Wei-Chen Chen <phyclust at gmail.com>
License: GPL (≥ 2)
URL: http://thirteen-01.stat.iastate.edu/snoweye/phyclust/
SystemRequirements: GNU make
Citation: phyclust citation info
In views: Phylogenetics
CRAN checks: phyclust results

Downloads:

Package source: phyclust_0.1-10.tar.gz
MacOS X binary: phyclust_0.1-10.tgz
Windows binary: phyclust_0.1-10.zip
Reference manual: phyclust.pdf
Vignettes: phyclust-guide
News/ChangeLog:ChangeLog
Old sources: phyclust archive